miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST045558
species: Oryza sativa
miRNA family: MIR1431
source: microPC, original name: miR1431

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGCGAGTTGGCCCGCTTGC

miRNA*
 AAGCGGGTCAACCCGTGAACC

mismatches: 3
bulges: 0
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pre-miRNA
 GCAAGCGGGTCAACCCGTGAACCCGCTTATAGGCAAAATTAGTAGGTAACCCGTATAAATGAGTTTATGGATCGACCCACTTGCATCTCTAAGTGCGGCA
AATCGGACCACGACGTGAAAACACACGGGTTATCACTTATTTTACATATAAGTAGGTTTGCGAGTTGGCCCGCTTGC

dot-bracket secondary structure
((((((((((((((.((..((((..((((((.(.(((((.(((.((((((((((.............(((.((((((((((((......)))))).))..
..)))).)))....((....))..))))))))))))).))))).).))))))..))))..)).))))))))))))))


SIMILARITIES
miRBase osa-MIR1431: 1e-97

PMRD osa-miR1431: 1e-97

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence




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